PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01813.40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 2198aa    MW: 243043 Da    PI: 9.167
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01813.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.28.9e-0619121933627
                     -SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                     C+++ +tG C+ G++Ck +H++
  Jcr4S01813.40 1912 CPTYEATGSCPQGSKCKLHHPK 1933
                     *****************99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.005618571882IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.79818571883IPR000571Zinc finger, CCCH-type
SMARTSM003560.08618841910IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.78918841911IPR000571Zinc finger, CCCH-type
SMARTSM003560.4919111933IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.78419121934IPR000571Zinc finger, CCCH-type
PfamPF106641.5E-4420782186IPR018922NAD(P)H-quinone oxidoreductase subunit M
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0055114Biological Processoxidation-reduction process
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0016655Molecular Functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2198 aa     Download sequence    Send to blast
MDPPRPSYFH QTRYAHQPPA PPPHHHPFPN NPNIYASHHS SLLAALPPPS LRPQAQQLPQ  60
PPLPSFRPVP SPQPFNSQNS QFNYNPNNFS PSNHPGSTQH PDFHKFTQSP RVLHQKPFDD  120
ELPRRLPDYI RENRSDLREP PRVLPDRWST RSISHANLDP DSYRRQLDNH PFSPMKIRHD  180
LESNSRFIEE HKQREELLLV RGDDNYHRRN QFGSTSDRTS RDFQVVSNRM NHSSLYENLR  240
GFSYDGQLNE NQRRVHEREV NEDMLDSFID IGSNQIGDPD GIRVGSVKRE HYRIQKPSYR  300
NREDDRVHYS GYFDDSKSSF RGKDQNLYAD HDMEEQVRVG SPVELDVSFK SNSLVAKAIL  360
TPASNSAGVS DSNLTPKNGK VRKLLVLNKD SACSSPLKPN EGTVKLDNAS VTNYSAGSDD  420
DLKQLKEEVP VSGTGDMLDS SSLPGSSRAK VSPAKSKLEN SSADTLSNKK ETNVVSGKAF  480
SLKAGKKKKI VKRVVKKVVD PNLSSSISQR IKESNEPVIA DGFVHGQPAS SEPEKDAAIA  540
SFDIVNSQPC SSEMTVMPEN DKVERFAKAM TLENGTSDNS GRLCVPGTKR KWNRSTSPLG  600
SSSHEETKIN DNITNGISAN NMHLISETGK HYTKSIGENT IFDIHSVEEA SQQLCRNRDL  660
SLPENNAPSG SPKVLLSSEC NASFGLLNPG KIKTPASLCN TTSGDGHKNC LVNSPRRNTV  720
SDDQTTDVGC EQPFKSKGEL EIQNATTSAS SSSEGVGTVI SSDNSHTIAG EINFSSHGTS  780
GYIHNQPSRD KFTTSLKDVS LGRSLSCMVS GGGSKENTPN LTESKKNVET PELDLSRPEG  840
NDMYLEPVNM VRPGCWVDTT LRLSFKNPTP TEFTVSGDGC GNVGLQSCTD GVTSFPKKNS  900
TDSGSINDVS SSGTSPQNTK KRKFSDSQLE LTCPVASDVK EGPVTICTSV SGVEVPSNSC  960
NGLMQSEAEA RVSVLHPFSD SGPPYLQREI TTSGDHPSGE GYRSTAASLK DAIGDGGLKG  1020
THSCSAAVEL EIPVVQSLCL SRFECEQIAG VTPVMPGSSP QKNSICIGCE VRKMNVDSEQ  1080
AIVDGGTTKC VFPSELQSPD LDGMDVENDS CHHVKNDLPS VLNYLSSLRD GTGVSTPRSS  1140
NEVIGLVPDT LSDMNSLETL PDFPSTSHDQ LSIEKVGGHD ENILGKTATQ GGSNISALTS  1200
GSPNTENNLN SDHGVENDHL FSRRIASLPS QASRNSTQIL TTFNGEKYGR KNQLTHAVSR  1260
IYPGRPSFGF TAKSTPSSTH ISKSRTWHRT DNSSTSASPG NKVISSTVPA QRQLPKKMTK  1320
LLGTSYIRKG NSLVRKPIPV TGQFQGSNIL SSSVPRLNSL GTDEVKNDGP DTRTTVDPPN  1380
FVRTGGHASF ERPRTPPLPS ATKMPNHATN SFGDLISSSL AQPLHDCAAE IAPDPMTSPE  1440
SKNVLKSSED VIKNVENSMV QTGQINILDY NNETNDGNLV SSNVNSIKYV KQKLNQLVAT  1500
SNPHSLSVNH AHNIPAIPSD SYYKRRKNQL IRTSLDNQVK VAVGMSDESV NSEGKSLHSI  1560
SSSQSLNKRK LRKDVTKTRK PSKFSLVWTL RSSRLSNDDG GSLNRQKVLP HLFPWKRATY  1620
WRNFMPTSVV SSGNSSSSTI RKLLLLRKRD TVYTRSKHGF SLRKSKVLGV GGSSLKWSKS  1680
LERRSKKVNE EATLAVAEAE RKKREQSDAS RAISGTKNRN SSRKSVYCIE LHQVGGDPGE  1740
RIFRIGPVRY KMDSSRRTLQ RISGGLFLKF FTLHDGSSNF AALQTEKDAK RSYVPRRLVI  1800
GKHEYVRIGN GNQLVRDPKK RTRILASEKV RWSLHTARSR LARKRNADCK LTHKVIPERM  1860
PDCSYFMQGL CTNKDCPYRH VHVNPNAPTC EGFLRGYCAD GDECRKKHSY VCPTYEATGS  1920
CPQGSKCKLH HPKNRSKGKK SKQSREKKKA QGRYFGSMNI NTSDPGPAVS EKHLVEDNDN  1980
IGSEGSIADY ISLDFSGETA ESTNIVEEQT SFRDSDPMDL SANHSSLCHG RIEFVMHEEK  2040
KKRSSRRRRN KSTQPRPVEK QVNVKSKNMS REYGGQWLSS VTRHVRIYAA YIDPETWEFD  2100
QTQMDKLTLL LDPTNEFVWT DETCHKVYSY FQELVDHYEG APLTEYTLRL IGSDIEHYIR  2160
KLLYDGEIKY NMNARVLNFS MGKPRVLLNN DDQLRDAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012078329.10.0PREDICTED: uncharacterized protein At1g21580 isoform X2
TrEMBLA0A067K9S40.0A0A067K9S4_JATCU; Uncharacterized protein
STRINGPOPTR_0002s07810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61031010